NGS memo
2017年6月25日 星期日
DNA to RNA, Reverse Complement using perl one-liner
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Extract sequence from fasta using NGS tools : bedtools, samtools and gffread
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DEseq2 usage
Extract sequence from fasta using NGS tools : bedtools, samtools and gffread
Get sequences of rRNA, tRNA, snRNA and snoRNA from Rfam database
Create a folder for storing Rfam and downloading index file, family.txt. # Create and enter Rfam folder $ cd $HOME $ mkdir Rfam_ncRNA $ cd...
One-line get sorted Bam file from bowtie
One line get sorted Bam file $ read=collapsed_read.fasta # collapsed fasta that fastx_collapser creates $ genome_index=Genome ...
